Organic carrot breeding delivers novel varieties, cutting-edge research

In 2018, CIOA variety trial sites were located in California, Hawaii, Indiana, Maine, Washington, Wisconsin, Vermont, and Virginia. Each site tested a different mix of 34 promising advanced breeding populations (these are varieties that are nearly uniform enough to release commercially). Simon is especially excited to see more evidence that the most important traits are “fixed.” This means that from general appearance to disease resistance to flavor, CIOA partners are finding that the varieties in development are performing relatively similar across trial locations.

 

“From a breeding standpoint, the process of putting together the right combination of traits and then having them reliably expressed across regions is so important,” Simon explains. “CIOA’s extensive trialing network is providing us more confidence that certain traits will express in varying environments, allowing us to accurately report just how well the overall varieties perform in different regions across the U.S.”

 

 

Simon says that two traits in particular are worth noting: top size and nematode resistance. Research shows that carrots with bigger tops help suppress weeds, a costly production challenge for all carrot growers, not just organic. CIOA breeders have had success in incorporating this trait into breeding lines to support better weed competition.

 

CIOA is also having success in breeding orange and novel colored carrots that demonstrate resistance to the two major species of root knot nematodes, tiny roundworms not visible to the naked eye. Nematodes live in soil and feed on plants, leading to malformed, stubby, and hairy roots, and tougher skin and lower yield. Furthermore, growers who aren’t organic are losing access to chemical fumigant and spray controls, making breeding for resistance that much more important to the entire industry.

 

CIOA’s research is contributing to emerging science regarding beneficial microbe associations with crops as well. Plants (including carrots) associate with a diverse assemblage of microbes living on the surface and within plant tissues, which is now commonly called the plant microbiome. Some of these microbes have the potential to help plants acquire nutrients and withstand biotic and abiotic stress, so identifying factors that affect their recruitment and survival is important to optimizing plant growth. CIOA partner Dr. Lori Hoagland and her research team at Purdue University have determined that a carrot’s genotype plays a small, though significant, role in shaping these beneficial endophyte communities, indicating it may be possible to select varieties that are more apt to recruit them from soil. Other studies are underway to determine if researchers can identify differences in carrot genotypes in how they interact with soil microbes to facilitate organic matter decomposition, which could be important for managing organic nutrients.

 

 

The CIOA project team takes a participatory approach to plant breeding, where farmers, formal plant breeders, and members of the seed and food industry collaborate on setting project priorities and evaluating the results. Evaluations have also closely involved consumers of organic carrots to ensure that breeding projects not only meet the needs of growers with traits like disease-resistance, but also meet the expectations of the market. Not surprisingly, flavor and nutritional content are of top priority to consumers of organic carrots. CIOA hosted seven variety tastings in 2017 and 2018 to gather feedback on their projects from consumers, focusing on flavor, texture, color, and appearance. This feedback is evaluated and then informs breeding decisions moving forward.

 

 

The CIOA project takes a classical approach to carrot breeding, starting with intercrosses to combine traits from two breeding stocks in one offspring population. So, for example, intercrossing breeding stock with good flavor and an unrelated nematode resistant carrot, to develop a new breeding line with both good flavor and nematode resistance. As CIOA breeders develop DNA markers to track genes controlling these traits in carrots, the 5 to 10 year process of combining traits will be be reduced. That is good news because carrot growers and consumers are interested in improvements for many traits.

 

 

 

For now, CIOA is poised to release several varieties adapted across geographical regions in the U.S. Project partners plan to release at least half a dozen varieties within the next two years, including a purple-orange carrot and some red varieties. Reds are of special interest to organic growers, who report having limited options that have good flavor.

 

CIOA has already released some breeding lines with exceptional nematode resistance to other breeders, including a carrot breeding collaborative in British Columbia, as well as to the organic seed industry. These lines support the breeding work of others, resulting in even more improved varieties entering the marketplace. CIOA’s intent is for the products of their work to remain in the public domain: free of intellectual property rights that restrict the ability of farmers and breeders to freely operate. CIOA believes it’s important that everyone have continued access to use and further develop these new varieties and breeding lines that were supported through public funding.

 

 

Congress recently passed the 2018 Farm Bill, which more than doubles the amount of research funding available to the USDA’s OREI program, CIOA’s funding source. By 2023, $50 million will be available each year to support research that benefits existing organic growers as well as transitioning growers who face a steep learning curve when adopting organic practices. Because organic research often focuses on soil health and alternative pest and disease management, the results benefit all farmers — not just organic.

 

“One of the long-term impacts of CIOA – and of publicly funded organic research in general – is that graduate students working on this project are developing expertise in organic systems,” says Colley. “They represent the next generation of plant breeders and agricultural researchers. And the demand for and interest in organic farming is only growing.”